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Salk Institute Releases Cannabis Pangenome Revealing Vast Genetic Diversity

A map of nearly 200 genomes unlocks untapped genetic variation for hemp advancement through precision breeding of stress-tolerant, high-cannabinoid varieties.

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Overview

  • The pangenome study, published May 28, 2025, mapped almost 200 Cannabis sativa genomes and discovered genetic variation up to twenty times greater than in humans.
  • Haplotype-resolved assemblies exposed structural genomic variations and mobile DNA elements that govern cannabinoid biosynthesis, including pathways for rare compounds like THCV.
  • The research team generated the first detailed sequence of the cannabis Y chromosome, revealing male-specific traits that could diversify breeding beyond feminized lines.
  • Comparative analysis of European and Asian wild cannabis relatives identified reservoirs of genes for stress tolerance and disease resistance to enhance hemp resilience.
  • Researchers say the pangenome resource will accelerate development of medicinal cannabis and industrial hemp by guiding precision breeding and biotechnological innovation.